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1* AdaptationalDisplacement: It's unlikely that causal fans would be aware of how the show was inspired by the life and works of real-life forensic anthropologist Dr. Kathy Reichs, let alone that Dr. Temperance Brennan actually originated as a character in her novels.
2* {{Adorkable}}:
3** Dr. Zack Addy is utterly ''precious'' when he goes on about forensics or gets confused about human interactions or pop culture references. Fans dig him.
4** Vincent Nigel-Murray charmed even Brennan. His enthusiastic reciting of facts earned him the spot of "favorite intern" with the fans. [[spoiler:Hence the writers chose to kill him, just to twist the knife]] in Broadsky's final appearance.
5** Whether it's the film ''Film/{{Excalibur}}'' or the latest theory of his profession, Sweets is ''adorable'' when he gushes. Plus he sees Bones and Booth as [[ParentalSubstitute substitute parents]] which is something the audience finds endearing.
6* AlternativeCharacterInterpretation:
7** Angela's dad. His revenge on Hodgins is to get him drunk, tattoo him with Angela's face on his arm, then leave him in the desert. The fact is, he could have done far worse things, though getting him drunk and leaving him out in the desert is not good, the tattoo... is he secretly an Angela/Hodgins ShipperOnDeck and thought the break up would be temporary?
8** Gravedigger expert Thomas Vega. It's hard to reach a consensus on whether Booth is right that he's an opportunist a little too fixated on the infallibility of his target, or genuinely dedicated to catching the Gravedigger and saving the victims and happens to catch Booth on a bad day where he wants to lash out.
9** Every now and then there's an episode where the killer doesn't outright confess and the evidence isn't strong enough to make it completely certain that the team is right.
10*** In [[spoiler:''The Man in the Mud'']] the suspects lawyer points out that the murder weapon was a common tool lying around a crowded area that the accused woman could have just touched innocently (similarly to how another suspect in that episode left DNA evidence on the victim while giving him a friendly hug). And while she does seem to be starting to confess about the AccidentalMurder of the second victim, that could have simply been an innocent statement of grief and protest.
11*** In [[spoiler:''The Diamond in the Rough'']] Booth jumps on the suspect they arrest more out of a gut feeling about the motive than any actual evidence, and although he does say "I did it for us," at the end the GilliganCut of the PerpWalk might cause just a little doubt that it was the murder he was talking about or mistakenly thought his girlfriend might be guilty (she was sabotaging the victim but didn't seem to have been the killer based on the investigation) and was TakingTheHeat for her.
12** When Booth faked his death did Sweets really keep quiet about it just to research Brennan's reaction or was it for genuine security reasons? Brennan certainly thinks the former when she punches him and calls him out on it, but a major point of the series is how bad Brennan can be about reading people and their motives, and Sweets didn't outright say she was right.
13** For one about how evil a one-time villain was, in [[spoiler:''The Source in the Sludge'']] was [[spoiler:Derek Johansen]] recruited by the terrorists out of discontent after being unable to re-enlist in the army due to mental trauma from the bombing of [[spoiler:a prison he was guarding, which allowed several prisoners to escape]]? Or was he bribed into committing treason before that [[spoiler:while serving at that prison]], and perhaps even an accomplice in that bombing?
14** InUniverse in "The Man in the Bear" Bones is left to wonder if the killer started cannibalizing people because he was insane, or became a cannibal ForTheEvulz and becomes insane as a result of prion disease as a result of the cannibalism, with there being no medical way to prove which came first, the insanity or the killing.
15* {{Anvilicious}}: "The Tiger in the Tale" and Brennan's outrage about exotic pets and dislike of zoos. Emily Deschanel is a known animal rights advocate so also possible AuthorAvatar.
16* ArcFatigue: Pelant. He appeared in the middle of season 7 and was only caught early in season 9, being around for far longer than any other recurring serial killers. The writers really seemed to like him, as they put a DiabolusExMachina at the end of the Season 8 premiere for the sole purpose for having him hanging above the team's heads for another season. Many fans accused him of being a CreatorsPet, and rejoiced when he finally was [[spoiler:killed by Booth.]]
17* AssPull:
18** The third season finale, with the revelation that [[spoiler: Zack Addy, the team's awkward lab rat, had assisted a serial cannibal, with no warning whatsoever]]. According to the actor, the twist was basically decided at the last minute.
19** The tenth season premiere, [[spoiler: with Sweets' death. While characters have died on the show before, Sweets had been a major character for 6-7 seasons, and had plotlines second only to Booth and Brennan, not to mention being killed off in a season premiere.]] Plus, the twist had been kept completely under wraps until the episode actually aired.
20* SugarWiki/AwesomeMusic: "Running Up that Hill" from ''Judas on a Pole'' is a hauntingly fitting accompaniment to Max [[DeadGUyOnDisplay burning the body of a man who tried to kill his daughter and leaving it where it will be found]] in order to scare away anyone else who wants her dead.
21* BaseBreakingCharacter:
22** ''Pelant''. Either he's one of the best and most dangerous {{Big Bad}}s ever on the show, or he got way too much screentime and was treated as a nigh-omniscient force. There's plenty of room for both sides to make an argument.
23** Sweets to an extent for being a jerk with his experiment in "The Pain In The Heart" though he had far more fans than detractors [[spoiler:by the time he died]].
24* BadassDecay: In the first couple of seasons Brennan is presented as a capable and skilled martial artist. This seems to have been abandoned in later seasons, noticeable in "Harbingers in the Fountain" where an untrained doctor clumsily wielding a simple scalpel is more than a match for her.
25** In Season 7's ''The Warrior in the Wuss'', she provides some significant information about Karate, and just about any self-defense instructor will tell a student that just because someone is untrained doesn't mean they're not a significant threat, ''especially'' if they're armed and/or highly motivated. Even in the first episode, she was perfectly willing [[spoiler:to shoot a guy threatening to burn both of them to death instead of trying to subdue him.]]
26** She's back to taking out three guys at once in the season 6 opening, so this is likely a case of DependingOnTheWriter.
27* CompleteMonster:
28** [[spoiler:The Gravedigger, true identity [[KillerCop Heather Taffet]], is a dark cross between a SerialKiller and a serial kidnapper. Taffet's modus operandi is to sneak up on victims, knock them out with a custom-made stun gun, and bury them in a hidden container with 24 hours of air; either the ransom is paid, or the victims die. The Gravedigger's [[EstablishingCharacterMoment introduced]] doing this on Dr. Brennan--not because Brennan is a threat, but just because. Taffet also traps Dr. Hodgins at the same time, cutting the available air to around 12 hours, just because he witnessed the kidnapping. When reappearing, Taffet then tries to similarly bury Booth alive to destroy evidence, plus tries to kill Brennan and Booth again. Taffet also kills a private investigator with a stun gun because the former thinks that there's a chance that said investigator might find her in the future. Several of the other victims are also sought, with the cruel circumstances behind them all played up. In the end, Taffet admits to [[ForTheEvulz just enjoying killing people]] and the effects that being [[BuriedAlive buried alive]] has on victims; the ransom money was immaterial]].
29** Seasons 7-9: Christopher Pelant is a [[HollywoodHacking genius hacker]] and a brutal SerialKiller. His first murders his guidance counselor after forging a recommendation for him to go to Stanford. In his adult life he was under house arrest for hacking UsefulNotes/ThePentagon; he later escapes and retaliates against the government with a new killing spree. Always one step ahead of the Jeffersonian team, Pelant is not afraid of using brutal tactics against them, and proudly takes responsibility for his actions. Pelant would later [[FrameUp frame Brennan]] for the murder of a friend and pulls strings to keep her friends from interfering. In a later appearance, he [[SadisticChoice forces Hodgins]] to forfeit all his money or else he'll [[WouldHurtAChild destroy a girls' school]] in Afghanistan with a military drone. He also cripples and later kills FBI agent Flynn, and brainwashes a girl into killing three FBI agents. When he [[StalkerWithACrush develops an intellectual infatuation with Brennan]], he coerces Booth into calling off their wedding, and not to tell her why, or else he'll continue to kill innocent people. When finally cornered in his hiding spot, Pelant takes to holding Brennan at gunpoint in a last desperate attempt to win. Intellectual, [[ItsAllAboutMe egotistical]], controlling and vindictive, Pelant proves to be a dangerous enemy to the Jeffersonian team with his love for playing people like pawns, and killing those in his way.
30** "[[Recap/BonesS3E5MummyInTheMaze Mummy in the Maze]]": [[NightmareFetishist Pete Geller]] is an EMT who moonlights as a SerialKiller each Halloween. Luring in a wounded girl every year by using his position, Pete then kidnaps them to his secret lair in the subway, where he [[IKnowWhatYouFear uses their worst fears]] to scare them to death; by the time he's identified, he's killed two girls through this method, [[BuriedAlive burying one alive]] and leaving the other in a room of tarantulas. He then mummifies their corpses to leave them in horror attractions where random bystanders can see it, causing even more fear to those who find them. He intends to continue this haunted tradition with Megan Shaw, scaring her to death with [[WhyDidItHaveToBeSnakes snakes]].
31** "[[Recap/BonesS5E1HarbingersInTheFountain Harbingers in the Fountain]]": [[MeaningfulName Tom Fargood]] is both a cult leader and ConMan. Fargood cons a group of twelve sickly innocent people into giving him their money by promising them better lives. He then poisons them with antifreeze, which kills them, and then hides the evidence. Continuing his work after this, Fargood recruits the elderly into retirement schemes, when in reality he kills them after fleecing them of cash. Unrepentant of his crimes, Fargood smugly even mocks the investigators with the knowledge that they can't pin anything on him.
32* CrazyIsCool: Angela's dad. Let's list the things he's done.
33** After Hodgins and Angela broke up, he got Hodgins drunk, gave him a tattoo of Angela, and left him in the desert.
34** He asked Hodgins to retrieve the car he lost in a poker game from the bikers who took it.
35** He insisted that Hodgins and Angela had to name their baby Staccato Mamba. When Hodgins refused, he got Hodgins drunk and gave him a tattoo of himself (imagine having a tattoo of your wife on one shoulder and her father on the other), as a way of congratulating him on standing up to his father-in-law.
36** He somehow got the idea to use loud rock music to get his grandson to sleep. ''And it worked''.
37* CreatorsPet: Pelant. The writers really seemed to enjoy writing him, as they used at least one AssPull just to keep him one step ahead of the Jeffersonian team.[[note]]The Pelant saga feels like it was originally going to end with "The Future in the Past", but instead the crew decided to keep him around for another season.[[/note]] Fans, however, got annoyed at Pelant being built up into an overpowered InvincibleVillain. He was given the role as the main antagonist of ''two'' season finales, and other characters were also very quick to call Pelant brilliant and even say that he's smarter than them. It wasn't until season 9 that his arc finally ended, and that didn't stop him from showing up posthumously over and over throughout the following arc. He even showed up in the next few landmark episodes--an honor they wouldn't extend to ''Sweets''.
38* CriticProof: This show was, in the words of the crew, FOX's "little show that could". Many critics and reviewers brushed it off as yet another procedural (completely ignoring that it's more character-centric than others), FOX themselves walked a thin line between "taking it from granted" and "forgot it existed", also going on to move it all over the schedule. ...And yet, despite never really getting much recognition, the show found an extremely loyal audience that helped it survive for 246 episodes over 12 seasons.
39* CrossesTheLineTwice: Billy Gibbons (Angela's father) forcing Hodgins to get a tattoo of her and then leaving him in the middle of the desert. Good thing he lived. And this is after promising Angela that he won't seek revenge. And then he does it ''again'', this time because Hodgins refuses to let him name the baby something ridiculous.
40* DiagnosedByTheAudience: It is generally agreed among fans that Brennan and Zach are autistic, and quite a few of the interns seem to be as well. Hodgins has shades of it, but more ambiguously.
41* DieForOurShip: Sully. Fans loved killing him and sinking his boat while he dated Brennan.
42* EnsembleDarkhorse:
43** Dr. Gordon Gordon Wyatt. An overall polite and nice guy who just happens to be played by Stephen Fry.
44** All of the Squinterns are immensely popular with at least some fans, but Wendell and Vincent are probably the most universally loved of the bunch.
45** Amy Cullen might have only been in one episode, but the tragedy of her TheLittlestCancerPatient situation and her tender interactions with Angela make her a well-remembered guest star.
46* FanNickname:
47** The official forum is "The Boneyard".
48** The rotating squints are "The Squinterns".
49** "Baby Duck" for Sweets, and "The Duck Family" for him, Booth, and Brennan as TrueCompanions.
50* FanonDiscontinuity: Some fans prefer to think the ''Series/SleepyHollow'' crossover didn't happen, or at least is non-canon to the ''Bones'' universe. Not necessarily because it was ''bad'', but because of confusion regarding {{Shared Universe}}s and the clash of tones and styles between the two shows (one being all about science, the other being all about the supernatural). If the two shows do indeed share a universe; the entirety of Brennan's skepticism around the supernatural is thrown out the window, with magic and spirits all being 100% real. In its regular episodes, this show has only [[SkepticismFailure hinted at]] [[MaybeMagicMaybeMundane the supernatural]] occasionally, with things such as Avalon's powers and the ghosts of Booth's dead war buddy and Brennan's mom.
51** In the Season 9 premiere, Hodgins mentions he wanted to record ''Sleepy Hollow'', further putting into question the crossover episode's canonicity.
52* GeniusBonus: When discussing with Booth and Sweets how they can get the murderer of a chess master to confess in "The Master in the Slop" Brennan mentions "the famous 1912 game Levitsky versus Marshall". Levitsky versus Marshall is [[https://en.wikipedia.org/wiki/Levitsky_versus_Marshall a very famous game]] that Marshall won with a brilliant queen sacrifice. Furthermore, bluffing your opponent in chess by playing aggressive moves in a lost position is called a "Marshall-swindle". Both of these facts foreshadows how Brennan, Booth and Sweets get the murderer to confess: [[spoiler: They arrest his mother for the murder.]]
53* GratuitousSpecialEffects: A particularly egregious example occurs in at the end of an episode where Bones and Booth start shooting nerf guns at each other. The balls are clearly CGI and the actors are clearly pumping empty guns, and it rather begs the question why not just use real nerf balls and save the special effects budget?
54* HarsherInHindsight:
55** Season 1’s “The Man in the Fallout Shelter”, specifically the quarantine Christmas, hits much different now that it did back in 2005, after the [[UsefulNotes/COVID19Pandemic Covid pandemic]] forced millions of people around the world to spend Christmas 2020 in isolation and away from their families and loved ones.
56** The episode where Booth finds his and Brennan's new house, when they're adorably gushing about how perfect it is and talking about how they can have Wendell fix it up and can plant cherry trees--and really many of their sweet home scenes in that house in later episodes--are harsher knowing that, in the Season 9 finale, [[spoiler: three armed Delta Force agents attack Booth to silence him, and in the ensuing fight, the house gets so many holes blown into it that it comes out looking like Swiss cheese by the end. By Season 10, the family has moved into an entirely different home]].
57** [[spoiler: "The Bones on the Blue Line" had Sweets suffer PTSD from someone dying right in front of him, being faced with his own mortality. About five seasons later, he's killed in the season 10 premiere.]] Really, ''anything'' involving [[spoiler: Sweets]] could count as this now, from his relationship with [[spoiler: Daisy]], to Bones and Booth insulting him, and treating him like he's worthless, etc.
58** Sweets wears a ''Franchise/StarTrek'' red shirt costume to a sci-fi/fantasy convention in season 4. [[spoiler: RedShirts always die in that series. Five seasons later, he's killed off]].
59** In Sweets' first appearance in "The Secret in the Soil", Booth says, "He's just a kid. The worst thing that's ever happened to him is probably losing at Mortal Kombat." One season later, in "Mayhem on a Cross", Sweets is revealed to have had an abusive childhood, something Booth and Bones both relate to, and lost both of his adoptive parents just before he started working with them.
60** Like the above example, pretty much anything with [[spoiler: Max]] is harder to watch now that he's gone. In particular, there is one episode where Brennan [[spoiler:pretty much kicks Max out of the family for not picking up her calls because he lost his phone while taking care of baby Christine]].
61** In "The Proof in the Pudding", Hodgins distracts a guard who's watching everyone in the lab closely. The guard punches Hodgins in the back and Booth says Hodgins is lucky he wasn't paralyzed for life. Season 11 makes that statement a bit harsher.
62** "The Girl in the Mask" features a subplot where the Jeffersonian crew try to figure out if a visiting anthropologist, who is non-binary, is male or female. While played for laughs then, now it comes off as highly offensive.
63** In Season 2's "The Girl in Suite 2103", Hodgins and Zack accidentally set off a small explosion in the lab that leaves Hodgins on the floor, though he quickly gets up and laughs in off. [[spoiler: Season 10 would see Hodgins paralyzed from the waist down by an explosion, while the series finale would blow up the entire lab.]]
64** In Season 7, Cam forges several college applications in her adopted daughter's name in order to stop her from following her boyfriend to a state school. While this was already seen as questionable at the time, it looks even worse in the wake of the 2019 Varsity Blues scandal, where dozens of people were caught committing fraud to get their kids into elite colleges. Downplayed with the fact that Michelle didn't accept the fraud offers and chose to apply to schools on her own.
65*** In addition, Cam is later subjected to identity fraud herself, which causes her a lot of physical and emotional distress.
66* HilariousInHindsight:
67** "The Man in the Fallout Shelter" is much funnier now that Bethesda owns ''{{VideoGame/Fallout}}''.
68** "The Cinderella in the Cardboard" basically predicted Tinder.
69** Brennan is very against the idea of anything not scientific, whether it be supernatural, magic, religion, etc. ...And then they did a {{Crossover}} with ''Series/SleepyHollow'', in which the team meets a man born 200 years ago who is partnered up with a modern-day police officer. To top it all of, [[spoiler: Brennan shows a document concerning said man that no one at the Jeffersonian absolutely can explain scientifically.]]
70* HollywoodHomely: The Wiccans in "The Witch in the Wardrobe". Booth is repelled at seeing them naked during their ceremony but when we see them clearly in the light of day all of them are at least slightly above-average lookswise.
71* HoYay:
72** Many moments between Zack and Hodgins.
73** Zack and Vincent seem a bit like a bickering couple in Booth's coma dream.
74** Sweets and Vincent share a very, ehem, interesting glance at the end of "The Babe in the Bar".
75* InformedWrongness: "The Mystery in the Meat" depicts the food industry as wrong for classifying schools as a "second-tier market" and giving students low standard (yet otherwise still safe and edible) food. This is despite the fact that children don't care that the school dinners aren't the best tasting in the world (something the episode points out), as well as the fact that buying low standard food makes it affordable for the schools. Granted, serving human meat isn't exactly good, but this was clearly an isolated incidence, caused by criminal activity, and not a common enough occurrence to justify questioning the system. It doesn't help that the ''only'' argument against this practice is "children are our future", which is pretty weak, considering the food in question doesn't have any negative impact on a child's development. If anything, forcing schools to only serve top-tier food would have negative consequences due to being more costly and, depending on how it's payed for, would mean diverting funding from more important things (like books and class equipment) or charging students extra lunch money, disadvantaging poorer students.
76* LikeYouWouldReallyDoIt:
77** Booth seemingly dying in season 3 "The Pain in the Heart".
78** The beginning of the Season 11 premiere (along with the promos for it) try to make the viewers think Booth's been murdered and the team's examining his remains. This isn't really effective, since a show like this wouldn't kill one of its two main characters eleven seasons in, not to mention that within 10 minutes, Brennan determines the remains are not Booth's.
79** Similarly, the promo for the Season 8 finale makes it seem like Pelant managed to shoot Booth.
80* MagnificentBastard: "[[Recap/BonesS10E19TheMurderInTheMiddleEast The Murder in the Middle East]]": [[ConMan Jimmy Kosinski]] is a [[FauxAffablyEvil charming yet vicious]] bookie, planning to get money from FBI agent Seeley Booth after a bet of his goes wrong. Jimmy subtly threatens Booth's wife, Dr. Temperance Brennan, and their daughter for the money by disguising it as but a simple visit he will make. When Booth's partner James Aubrey tries to stop him, Jimmy simply says he could reveal Booth's gambling issues to the press and ruin his FBI career if they try, while cleverly masking it as just a hypothetical scenario, knowing there's nothing they can do to react to this threat with it being presented like that. Ultimately, Jimmy ends his run as one of the show's [[TheBadGuyWins most successful villains]], having gotten the money and [[KarmaHoudini one of the few to get away with it all]].
81* MarySue: Brennan herself. Let us count the [[CommonMarySueTraits ways]].
82** Declares herself the most brilliant forensic anthropologist in the world, to the extent that when she leaves, the Jeffersonian's lab is downgraded as the top forensic lab until she returns.
83** At least early on, is a master martial artist.
84** In the episode where Booth and her attend a fantasy cowboy shooting competition, she keeps up with Booth, an Army Ranger, trained sniper who is considered one of the top marksmen in the country, possibly the world.
85** Not only rich, but rich because she is not only the best forensic scientist in the world, but is capable enough to be a massively profitable fiction writer.
86** Always declares herself to be right or correct, which the script nearly always supports.
87** Frequently is rude, condescending or outright cruel to people in positions of authority over her, which only causes them to be cowed rather than any actual consequences occurring.
88** Gets away with a great deal, such as when she assaults a misogynist suspect in an interrogation room, has no remorse and is ultimately given a slap on the wrist.
89** Contrasting Squintern Oliver Wells, who is just as abrasive as she is, he is described as a douche, while the core team tends to overlook Brennan's similar, if not more severe, behavioral tendencies.
90* {{Moe}}: Most of the squinterns and Sweets get their fair share of this in addition to being {{Adorkable}}.
91** For Sweets, it's his nerdy and NoRespectGuy moments that do it.
92** Zack's [[NoSocialSkills lack of social skills]], assistance with Zack's MadScientist experiments, and hero worship of Dr. Brennan make him hard not to like (except maybe during the season three finale).
93** Vincent being a MotorMouth about LittleKnownFacts, plus stuff like his CannotTellALie awkwardness, make him adorable.
94** Arastoo, due to the amount of empathy he brings to the cases he works on and for his relationship with Cam (such as when we get to hear his love poetry).
95** Wendell's status as TheEveryman among a group of nerds and his thoughtfulness in dealing with his peers make him count.
96** Jessica, due to her sense of creativity, TheNicknamer moments, enthusiasm for the MadScientist experiments, insecurities about the dissolution of the educational cooperative she grew up in, and CollectorOfTheStrange hobby.
97* MoralEventHorizon:
98** Epps' various murders and sick games are bad enough, but you really see how twisted and evil he is in "The Man in the Cell" when he [[spoiler: burns a fireman alive, saws his wife's head off while she's ALIVE, sends her heart to Angela, and booby-traps the decapitated head of his wife with a glass capsule containing a highly poisonous powder, which almost killed Cam.]]
99** Killing innocent people just because they're in the way was this for Broadsky. Killing criminals and crooks made him vaguely sympathetic, in a Max Keenan sort of way, but this seemed to cross the line. Of course, Caroline has a different opinion:
100-->'''Caroline:''' Man sneaks into [Booth's] house, threatens [Booth] with a gun. That's unforgivable. He should be lethally injected just for that.
101** Kovac tortured Aldo Clemens in order to get Booth's name out of him. When that didn't work, he kidnapped another one of Booth's army unit friends along with an innocent old lady with no connection to Booth and proceeded to brutally torture her in front of him so he'd give up Booth's name. When he got what he wanted, he kept torturing him as long as he was able just for the fun of it.
102* {{Narm}}:
103** The birth of [[spoiler:Booth and Brennan's baby]]. Slow-motion in a ''manger''.
104*** The writers realized this and joked during the Paley Center interview that they thought about giving Hart Hanson, his wife, and son a walk-on part at the end of the birth scene as the "Wisemann" family.
105** "The Cinderella in the Cardboard" features a dating app designer in tears over the fact that all of the beautiful women on his app would never look twice at him due to his bad looks. The narmy part comes in that not only is the guy HollywoodHomely ''at worst'', but Brennan tries to point out a glaring asymmetry in his facial features that -- unlike most of her observations of bone structure -- just ''isn't'' there.
106* NarrowedItDownToTheGuyIRecognize: Notably averted several times. [[spoiler:When Creator/WayneKnight (who played Newman on ''{{Series/Seinfeld}}'') shows up, you expect him to be the killer. He wasn't.]]
107** [[spoiler:When Creator/RobertEnglund shows up as a high school janitor who had a thing for knives and death you figured he was the killer. Nope! Nice guy all along.]]
108** This trope was averted a lot, actually - [[spoiler:Creator/ReginaldVelJohnson guests as a victim's boss, Creator/MayimBialik as a victim's best friend, Creator/DanCastellaneta as a security guard, none the bad guy.]]
109** Played very straight with [[spoiler:Creator/FrenchStewart playing a bit role as a fundamental preacher]] who gets shooed away by the cops in the beginning of the episode. He wasn't even in the running until TheReveal (by the characters, at least).
110** Also played completely straight in "The Flaw in the Saw", where [[spoiler: Creator/DavidKoechner’s character, pancake chef Jack Flap,]] turns out to be the killer.
111** No, [[http://mckaylaisnotimpressed.tumblr.com/ "Unimpressed" McKayla Maroney]] did not kill a rival gymnast.
112* NauseaFuel: The entire concept of the show is about bodies that are mangled too far for regular forensic teams to analyze, so this can be considered par for nearly every episode. Most of the show's openings also involve somebody coming across a dead body that's decomposing and covered in insects, often finding it in the most disgusting way possible.
113%%** The "pony play" episode.
114** "The Princess and the Pear". Guess what [[http://en.wikipedia.org/wiki/Pear_of_Anguish the "pear"]] is. And a version is made for use further south. If it's any comfort to folks, Pears of Anguish don't actually work -- the force needed to use them on either location is more than a Pear could exert. The Pear would break long before the human would. It’s unlikely they ever existed beyond drawings and later forgeries.
115** "The Critic in the Cabernet". Red wine. Body. How do you think they discover it? ...EWWWW! The liquefied man was somewhere between this and NightmareFuel.
116** Then there's the flattened girl who is often being compared to a pizza. They even use a piece of sheet metal to pry her off the cardboard she's stuck to.
117** Then there's “The Gamer in the Grease”, the episode with a person who was in used fry batter stuff... it's the usual NauseaFuel, right? Bones says that it's not her department and walks off... and then, when they pull the body out, the skin starts falling off, the organs start slipping out, and Bones quickly returns, since it is now in her department.
118** "The Babe in the Bar": an episode with a person who drowned in the mold of a giant chocolate bar. All of the decomposition gasses were trapped in her body and liquified it. Also, they didn't find the body until after the bar was set and they had begun cutting it. Cue liquidy goo spewing out of the giant candy. Imagine if they had started eating it before they found her?
119** "The Boy in the Time Capsule" had the victim's body locked into the time capsule of his old high school. For twenty years, the body's been decomposing in an airtight, sealed space. When they open it, there's basically nothing but ''soup'' left of him.
120** "The Bullet in the Brain": Aside from [[spoiler:the Gravedigger's head exploding and seeing her headless body]], there's also [[spoiler:the woman's body half-dissolved in lye, that Brennan and Booth find]].
121* NeverLiveItDown: Sweets allowing Brennan to think Booth is dead for two weeks for reasons that basically amount to ForScience is considered to be an unforgivable act by parts of the fanbase even after he became a more clearly sympathetic member and TrueCompanions with the others, to the point of turning Sweets into TheScrappy for some and/or having it viewed as a MoralEventHorizon.
122* OneSceneWonder:
123** The kid going hunting with his dad in "The Carpal in the Coy-Wolves" is pretty memorable. He'd rather be watching ''Series/ProjectRunway'' [[JockDadNerdSon than hunting with his dad]], yet is more composed than his dad when they find the body of the VictimOfTheWeek.
124** The characters from the first five minutes of "The New Tricks in the Old Dogs" are felt to be more memorable than many of the suspects from the mystery itself. First, there's the kids who discover the body while exposing toxic waste dumping and making a ''very'' long black snake firework. Then there's the AmoralAttorney who haughtily denies that the chemicals are dangerous, only to freak out and demand to be sprayed with decontamination foam (the team happily obliges) when he mistakenly thinks those chemicals have splashed on him.
125** The lawyer from "The Man in the Mail" who utters a deadpan "I hate my job" after his client ignores his advice to stay quiet and ends up looking guilty.
126** The rookie public defender from "The Don't in the Do" who has a FreakOut upon learning that her hair extensions came from a dead body in a funeral home.
127* OnlyTheAuthorCanSaveThemNow:
128** A villain example: [[spoiler: Pelant surviving BoomHeadshot. Booth's bullet manages to miss his brain stem and all other vital bits, going out through his right cheek. The worst injury he suffers from this is a discolored and blinded (but otherwise intact) right eye and maybe some missing teeth, the rest being just scarring from where he stitched his face back together. It's clear the writers saved him for the sole purpose of giving them a reason to hold off the wedding.]]
129** InUniverse after Bones decides to kill off Agent Andy (her Booth-inspired character) she's urged to find a way to have him survive in the next book and ultimately does so.
130* ParanoiaFuel: Pelant's HollywoodHacking is this in-universe. Imagine a sociopath who has complete control of any electronics and can track you no matter where you go unless you go completely off-grid, and even then he might try to hack a satellite or your car's GPS. If you get on his short list, he WILL find you, and God only knows what your fate will be. Granted, out-of-universe it becomes severe {{Narm}} to most viewers, but Pelant's mere presence in DC at the start of season 8 caused Hodgins to force everyone to forgo any form of computer electronics for the entire investigation, due to the fear of Pelant hacking them again and sabotaging the entire operation.
131* PortmanteauCoupleName:
132** Hodgela, for Hodgins and Angela.
133** Booth and Brennan are usually abbreviated to BB, but the introduction of [[spoiler:Booth's girlfriend in season six, whose surname also starts with a B]] has led to a few fans crying for Teeley.
134** Also, Swaisy for Sweets and Daisy.
135** Camastoo for Cam and Arastoo.
136** There were Cam/Hodgins shippers around who used Cadgins
137* PrimalFear:
138** The Gravedigger buries their victims alive.
139** Many victims' deaths qualify as this.
140*** There was one episode where they realized the victim had been stabbed in the neck. That didn't kill them. It just mostly paralyzed them so that when they were buried alive in concrete, they tried to swim to the surface with only their little finger.
141*** The SERBERUS soldier Pelant killed. Bones and Cam come to the conclusion that Pelant tortured him by continuously stabbing him in the spine with needles until the extreme pain put too much stress in his heart, killing him.
142* ProtagonistTitleFallacy: No, the series is not titled after the protagonist (Although it is Booth's nickname for her).
143* ReplacementScrappy: James Aubrey, the FBI agent who joins the team after [[spoiler: Sweets' death]]. Initially, at least. He managed to win a large portion of the fandom over during the course of the season (though certainly not everyone). As of the Season 10 finale, he's probably more of a BaseBreakingCharacter.
144* RescuedFromTheScrappyHeap:
145** When Cam first joined the cast in Season 2 to replace Dr. Goodman, fan reactions to her were mixed at best. Many fans bemoaned the fact that Dr. Goodman left right after spending his character arc in Season 1 bonding with and growing closer to the rest of the team, and hated the fact that Cam was so much harsher and more strict towards Brennan than Goodman was. The fact that Cam and Booth briefly rekindled their old romance (standing in the way of the OneTruePairing) did not help. However, once Brennan and Cam became friends, the fans warmed up to her along with Brennan. Cam and Booth broke up right afterwards (but have remained good friends ever since), which finally seemed to satisfy any last animosity fans had for her.
146** Repeated interference in the lives of his patients for his own agenda which amounted to malpractice, but which somehow inspired the other characters to rave about his professional chops, made Sweets a BaseBreakingCharacter for years, but eventually fans got to loving him, as evidenced by [[spoiler:general outrage and sadness when he died in the Season 10 premiere]].
147** James Aubrey was almost universally disliked when he initially joined the cast as [[spoiler:Sweets's replacement after his death]] in Season 10, though several fans warmed up to him over the course of Season 10, but certainly not everyone. The episode immediately after the two-part premiere deals with how Booth doesn't think much of Aubrey initially.
148* RetroactiveRecognition:
149** Creator/AaronPaul is the comic book store owner in Season 1 episode "The Superhero in the Alley", two years before he got his big break on ''Series/BreakingBad''.
150** A later episode in the season also features Creator/GiancarloEsposito in a guest role.
151** Creator/EricStonestreet featured as a D.C. cop in a couple of Season 2 episodes, two years before his breakout role in ''Series/ModernFamily''.
152** [[Series/BrooklynNineNine Norm Scully]] is one of the U.S.-Canada border guards who discovers "The Feet on the Beach".
153** [[Series/{{Supernatural}} Meg's second host]] is a suspect [[spoiler: and one of the killers]] in Season 1's "The Girl in the Fridge".
154** Creator/SarahRafferty, later known for playing Donna Paulsen on ''Series/{{Suits}}'', is the real estate agent who discovered the burned body in "The Foot in the Foreclosure".
155** Season 4's "The Beaver in the Otter" features a guest role played by Creator/JaimieAlexander two years before her first appearance as Lady Sif in ''Film/{{Thor}}''.
156** In another season 4 episode, "The Passenger in the Oven", the plane's pilot is played by Creator/CharlesParnell, later recognizable in a main cast role on ''Series/TheLastShip'' and supporting roles in films like ''Film/TopGunMaverick'' and ''Film/TheKiller2023''.
157* SeasonalRot: While ''Bones'' arguably never got truly pronounced seasonal rot and managed to maintain relatively consistent quality and preserve most of its integrity to the very end, many fans will acknowledge some slumps in the show's history:
158** {{Flanderization}} took Bones from being somewhat a socially inept and awkward, yet intelligent and strong woman, to being basically a clueless android who has no idea on how modern society works.[[note]]The final season episode "The Brain in the Bot" is a commentary of sorts on this: Brennan meets an intelligent robot that speaks pretty similar to her.[[/note]] It doesn't help that which characterization is used is DependingOnTheWriter.
159** Thanks to the 2007 Writers' Strike, the end of Season 3 suddenly [[spoiler: made Zack the Gormogon's apprentice without any warning whatsoever]].
160** For some people, the beginning of Season 7 is this for skipping past the Bones/Booth RelationshipUpgrade. After years of WillTheyOrWontThey, they become a couple off-screen during the TimeSkip, because... baby. (See RealLifeWritesThePlot on the Trivia page for more of why this occurred, though the season also showed that Booth and Brennan still had issues to work through in spite of getting together, such as Brennan keeping him out of the loop on baby updates.)
161** Season 7 also introduced the Pelant arc, which went on until early into season 9. This arc was characterized largely by HollywoodHacking, {{Ass Pull}}s, CharacterShilling, and pointless melodrama, giving the impression of an InvincibleVillain who existed mostly to YankTheDogsChain.
162** Season 10. The whole series switched showrunners, and one of their first actions? [[spoiler:Kill off a major character who had been around since season 3 [[note]] John Frances Daley wanted time off to direct a movie, and ultimately decided to pivot to behind the scenes work, but it's unclear if he meant for the character to be killed off.[[/note]] ]]. Individual episodes focused less and less on the actual discovery of the remains, to the point of occasionally skipping it outright. It also boasted a ReplacementScrappy who was very out-of-place on "The 200th in the 10th," especially given the conspicuous absences.
163* TheScrappy:
164** During her run as Booth's girlfriend (and thus, serving as an obstacle for the OneTruePairing) in Season 6, Hannah Burley became Public Enemy #1 in the eyes of the fandom. The scene that really cemented the audience's hatred of her was when she was in the hospital after being shot; when Brennan visited her, Hannah more or less demanded Brennan's sunglasses as a Get Well present, which fans found to be incredibly rude and inappropriate. To this day, she is still almost certainly the most hated character to ever appear on the show.
165** Avalon. Every time she shows up in an episode, the show (which normally espouses basing everything on cold hard science and facts and mocks the very concept of a profession like hers) suddenly starts treating it like there might actually be something to her powers, while the writers make up situations so she turns out to be right a ridiculous amount of the time and everybody who dares not believe her is either called out by her or Angela, or turns into a believer.
166** Sully became this for getting in the way of Booth and Brennan. He generated a lot of DieForOurShip fan fiction.
167** Daisy and Oliver seem to be about equal for this among the interns. Few liked Oliver's arrogance and JerkAss tendencies; and Daisy irritated many with her talking too much and overly excited personality. Granted, Daisy *did* mature more in later seasons.
168* ShockingMoments: The Season 9 finale ''The Recluse in the Recliner'' has Booth face off against three highly-trained Delta Force agents after being brought down by a blackmailed congressman. Booth nearly dies from his injuries, the house he and Bones shared is left in pieces, and the episode ends on the note that Booth has been accused of "murdering" the agents.
169* {{Squick}}: [[spoiler: Booth's [[BoomHeadshot handiwork on Pelant's face]] hits the trifecta of {{Squick}}, BodyHorror, and EyeScream: the right side of his face got completely blown open from the inside, and the right eye looks like some sort of cheap glass eye, completely blind and useless. Pelant had to triangle-stitch the wound without any anesthetic, and even after healing, the scars are still VERY visible.]]
170* StrawmanHasAPoint: In "The Brain in the Bot", an anti-robot activist tells Aubrey that people who claim to be a positive force in the world like the VictimOfTheWeek are actually only in it for the money, and says that the episode's victim was likely selling his A.I. meant to help autistic children to make robotic weapons instead. Later on, Booth and Aubrey find out that the victim ''was'' selling his A.I., though only to make "living sex dolls", not weapons. Turns out the guy wasn't so wrong on his former point...
171* TheyChangedItNowItSucks: Some fans reacted this way to Brennan getting married and having kids. They felt it was too much like how people in real life get told they'll change their mind about marriage and family.
172* TheyWastedAPerfectlyGoodPlot:
173** The writers initially seemed to be gearing up for another big ArcVillain with the Ghost Killer, with there being no consistent MO for the killings (unlike Broadsky or the Gravedigger), barely any clues on who the murderer could be (unlike Pelant, with whom the bigger problem was actually ''catching'' him), and no one but Brennan believing the serial killer even ''existed''. Then, in ''The Nail in the Coffin'', the writers instead took the route of TheKillerBecomesTheKilled, and used the Ghost Killer arc as a "bridge" to jump into the government conspiracy plotline that took up the Season 9 finale and the beginning of Season 10.
174** The plot of Hodgin's mentally ill brother, Jeffrey. It puts a heavy emotional and financial strain on Hodgins, specially in a moment where all their money was stolen by Pelant. The brother has an extreme psychological issue that makes him unable to live in society and their parents threw the boy in an institution, hiding his existence of Hodgins, but said brother is never brought up again after the episode he is introduced.
175** It might have been interesting to have an episode where Booth and Hannah went after whoever it was who shot her over her story in the subplot of ''The Bones that Weren't''.
176** For a single episode example, the "Psychic in the Soup" could have had more of a subplot out of it being the birthday of their dead friend [[spoiler:Sweets]].
177** Many felt the final season missed a good opportunity by not utilizing Max's past and filling in more of his story. He told Brennan in season 9 that there were still people who wanted him dead and might hurt her, but no further effort was made to follow up on it, even when tying up other loose ends in season 12.
178* ToyShip: Christine and Michael Vincent Hodgins.
179* UnintentionallySympathetic: Kathryn Walling, Cayla Seligman and Arianna Donas, three sixteen-year-old girls from "The Lost In The Found". Were they your stereotypical mean girls? To an extent, yes. Did they deserve to be badgered by Booth, arrested for the supposed murder of the victim, despite maintaining their innocence the entire time, without any actual probable cause to do so, and found out to have been drugged heavily enough by the victim that they completely lost several hours of time so that they would appear to be the prime suspects for her murder-which actually turned out to have been a suicide? Absolutely not. And did they get an apology from Booth after the fact? No, they didn't.
180* UnintentionallyUnsympathetic: For some viewers, Brennan's extreme literal-mindedness, I'm always right attitude, and lack of empathy and imagination gets old fast.
181** Brennan's abandonment issues with her father. This is brought up multiple times with her continuously forgiving her father only for her to be suspicious of him again the next time she sees him. While this in itself is annoying, what really makes Brennan this is that she is forced to do the same thing to Booth in the S7 finale. Not only does she not see anything wrong with her actions, she doesn't notice how hurt Booth was at losing three months with his daughter but her as well. Yet despite this, she still has the same abandonment issues with her father.
182** Also, her attitude at everyone's skepticism of the existence of The Ghost Killer. She acts as if everyone's in the wrong for not immediately going along with her belief/obsession that the serial killer is real, while ignoring there's zero evidence backing her up, when typically ''she'' doesn't believe in anything that has no evidence behind it. Also, as Booth points out, since ''Pelant'' was the one who brought up the Ghost Killer in the first place, it could've easily just been a ploy of his to make Brennan believe keeping him alive was necessary. Clark actually manages to call her out of this behavior at least twice:
183--->'''Brennan:''' So you don't believe me either.
184--->'''Clark:''' It's not about belief. It's about the evidence. ''You'' taught me that.
185
186--->'''Brennan:''' This evidence should've been linked to the Ghost Killer immediately.
187--->'''Clark:''' I did. I also noted the other fingers. Unless you're too arrogant to look at my findings.
188** Dr. Leon Watters from ''The Spark in the Park''. Professor Watters is depicted as a DistaffCounterpart to Brennan. He is aloof and seemingly devoid of emotion regarding his daughter. This is supposed to be a sign that he is going through HeroicBSOD, but it's made clear that he has always been a {{Workaholic}}. His ParentalNeglect is so severe that she is willing to mutilate herself just to get him to notice her. Yet he can't even remember seeing her the evening she died. When you combined the ridiculous number of RedHerrings, the killer's motive comes across as InsaneTrollLogic with the fact that the only thing sympathetic about him is Brennan empathizing with him. It hard to see how he's supposed to be likable.
189** While not exactly portrayed as a saint, Elizabeth Jones, the victim in ''The Passenger in the Oven'' comes across as a ''major'' AssholeVictim when you think about it. She was pushing the man she's been having an affair with to leave his wife, even though his wife was dying and had only months to live anyway, months he was trying to use to make her happy, and yet Jones was too selfish to give them that.
190** Broadsky gets portrayed as a KnightTemplar with noble motivations but that's giving him too much credit. He murdered [[spoiler:The Gravedigger]] when she was going to be executed anyway, and another one of his victims was a forger who'd testified against a drug lord who paid Broadsky to kill the man. Broadsky comes across as less of a man punishing the guilty and simply leaving collateral damage as he does an AxCrazy {{Jerkass}} whose OnlyInItForTheMoney and hiding behind a thin veneer of justification.
191** Booth himself can have his moments but his conduct in ''The Blood from the Stones'' is particularly uncomfortable when he flat-out tortures two suspects (in addition to refusing requests for a lawyer) in order to catch the killer of a cop [[DirtyCop who was corrupt and not squeamish about maiming people]], and had victimized them more than the other way around. Booth is partially aware of this by the time he roughs around the second suspect but it doesn't stop him.
192** Another Booth moment is after he shoots an ice cream truck speaker (due to his clown phobia it turns out) and spends a while refusing to admit that this is a sign of anything wrong or that he should be kept form the field despite how outrageous and dangerous that behavior was.
193** Angela for [[ReallyGetsAround constantly dating men]] in early seasons only to break up with them, with her always giving a flimsy excuse, which makes her look very self centered.
194** Hodgins following his paralysis. Granted losing the use of your legs would suck for anyone but considering that it couuld have gone worse for him you'd think he'd drop the self-pity.
195* {{Wangst}}: Hodgins after losing his mobility. PTSD aside, considering he barely escaped death along with all the other good things he has in his life basically amounts to him throwing a tantrum about being inconvenienced.
196* TheWoobie:
197** Sweets and, to a lesser extent, Zack. And if you don't feel bad for Hodgins during season 4, there's something wrong with you. Heck, Brennan herself-underneath that InsufferableGenius exterior lies a very vulnerable, fragile soul-the times when it's exposed tend to be quite sad.
198** Wendell as of Season 9. [[spoiler: He was diagnosed with a specific strain of cancer with an extremely high mortality rate. His father died of lung cancer and wasted away the little years he had, so Wendell was not hopeful for his already minuscule chances. On top of that, to relieve the pain from his treatments, he takes medicinal marijuana. But this means that he cannot work at the Jeffersonian after Cam found out. All of this came down on a guy who was perpetually happy and all-around good-guy. Even Bones lament how it seemed like he was being unjustly punished.]]

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